| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10000183 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 88997 |
| Total Scaffold Genes | 146 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 122 (83.56%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003074 | Metagenome / Metatranscriptome | 509 | Y |
| F020544 | Metagenome / Metatranscriptome | 223 | Y |
| F061867 | Metagenome / Metatranscriptome | 131 | Y |
| F067765 | Metagenome / Metatranscriptome | 125 | N |
| F074686 | Metagenome / Metatranscriptome | 119 | Y |
| F076126 | Metagenome / Metatranscriptome | 118 | Y |
| F095558 | Metagenome / Metatranscriptome | 105 | Y |
| F097028 | Metagenome / Metatranscriptome | 104 | N |
| F099349 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_10000183109 | F099349 | AGGA | MKSFNKWEQEQLDEGKVTIAKLRVGTTVTPMWKGRSAKNYGISGMPVYDGKVKVLGMGIVPFGKKAEKRHIIGKDYKDVQSKYKEIWNTEEIRYGRFWNAQHRMKTFFNTIAAEDKKLKPGFVCWIWEVVDGPDKGKIHYCFIDSDDRWAIAFLNKSAEFEMIS |
| Ga0206131_10000183110 | F076126 | N/A | MPDYDKVLELIEVLKLDSDNTIKKVTLNVKTFDTTTPSVFAQQPMVAVLTSEDYANSEIVKVSTTNTAVDIALWGYEYAGGDTYYESTIKDNAERTVVDLLQFQGTSTVDITALP |
| Ga0206131_10000183125 | F003074 | AGAAGG | MTKSTEEKILQVVNLSPSESWVERIVEIHPMKQVFYASILQALVFGSMLLSFFAINQFV |
| Ga0206131_10000183127 | F074686 | AGGA | MKNDYVVVDTVSIFKQRYIIPREELKKMNEDVTFSDTHAKQWAHESVECEEVKEFSQRWLGEQVTNIDFADTEKVLRLFKDDNEELSKEWSQAKQLDFINDWKDKTPK |
| Ga0206131_10000183143 | F067765 | AGGA | MSTKNRDNLIYFPSIHSNPPIDEVSVAEKIREYKESYSTELAEIIWENVLGEMARAGCEFDEDFETYFPSMILIFEAIRSLHLQTMGEEHQLQPFAKQNVAILDSDESQVAGGLKKNLEETIDIDEDL |
| Ga0206131_1000018325 | F097028 | GGA | MDHLTVLLERALYKHQKGQLSGVDDLYKSLIGTMGESKVVNLTEGESVNGKFDVLGKTRYPGRIEVKTANKPTNGKLGAWSLREKKGHCDWVALVDASGVQDSDYRVSVIPHDVFFDYFDNRSAKSDYVTWSFTYNESDKLSPEMTNLFLKYEVPIDIIRDL |
| Ga0206131_1000018363 | F061867 | GGAGG | MAKWPKRQPWHDGVRMQFDYEDYIMSVVKFTGSYGYKKGLWEVAFMDVDTRDFVDPPLDFLSEYYNPDPGIYGSLNDPDVDRCHKSLSLISNYIGEH |
| Ga0206131_1000018370 | F095558 | AGGA | MDYKGNNVETITHSKKIMLDRAARPYDGLSEGPFKESLSKMNGVFRKEVVSYRIKDGYLYRETAIRNFTDGDYHDTVKIETLHSVE |
| Ga0206131_1000018394 | F020544 | AGG | LKAYILTHDHPISRKYAKMCSQTCDAIDLDWEYFEGWSNCTGRMAWCQTGIKMKFYEPMLHVDFPTPEHKANTCSAGHAAIWKKIAEGDDEVGIVLEHDALMYYKPDIKVPDNYLITLGYKVTDPENYRAFDARDNEPRQLININGHEGAHAYMMTKRTAQNLIYEIEQRGVMGCVDNAYFILNQRCTQIPLAIMSPTPAIGYLRDSTIWDKSAHVNYEFIETFAKYYK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |