NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206129_10040503

Scaffold Ga0206129_10040503


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10040503 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3107
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067405Metagenome125N
F072424Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0206129_100405032F072424N/AMSAQIKKVLAPLQPVAKIVKYNTTLITTLLFCVIAFSMLPLHLLIKSPVQKQVMTRVHDVITTSIGQLLIFLLFVCLYMNADVENMVLLLYVLWLTNNQ
Ga0206129_100405034F067405N/AMVDSDFLQIKLLVREMIEGKIQINKPLVITSSDRTNTEELSFLSHILKYNNVEKNTMLIFLNEVLEIFNNQIIKLMRNSNIQNYIDNVKLEWDDSSDILFKDIFTEEQVKSMENIMENINELCRGFKEINTSVESNNVTDLVEEDDLVDRMDTFVGLISEFNENIGEITSELDRFEENLNELNSCVLLDLSMKNKRLYLEFNDMTDDKNIPENIQNIFLNYLLILNLLKKQIIYYKKTIKKVEEISGNMEHHTVSTKKVVKARDKLFMFQEQERGIESYLDQLTI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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