NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206124_10105963

Scaffold Ga0206124_10105963


Overview

Basic Information
Taxon OID3300020175 Open in IMG/M
Scaffold IDGa0206124_10105963 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1162
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0206124_101059632F012114AGGAGMKDREYYNCVFPEKRPRNVWVVYDTQTPKQQIGEVAAMSETEARQKVALHVMIPFTLSHIEE
Ga0206124_101059633F018906AGGAGLKTCKVNPLKLNETRFLADVHNKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILKYPLGTDGEITGELIYDTQINRDLGCVDVIGWRDFFEVADILQQIRNYNTGEYAIND

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