NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206124_10080037

Scaffold Ga0206124_10080037


Overview

Basic Information
Taxon OID3300020175 Open in IMG/M
Scaffold IDGa0206124_10080037 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019328Metagenome / Metatranscriptome230Y
F051944Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0206124_100800371F051944AGGAGMRYQVISVSVYGGTIRYEFDNKHEALCKVRELKDHAGMFLVKLVELETA
Ga0206124_100800372F019328AGGAGMANIFESPKELKKWAIKLANACGGQRVEKTLIMTKVNPQRVTELMDEFVESHNENTIQILKEMEEE

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