NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10659855

Scaffold Ga0211729_10659855


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10659855 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61747
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008165Metagenome / Metatranscriptome338Y
F016965Metagenome / Metatranscriptome243Y
F050993Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1065985546F016965N/AMFNYNGIEYTITGPIEVVSTTQLHVETDKGIILVDDTMEIYYELK
Ga0211729_1065985578F050993N/AMRVIRINTTNWIEEDFYLVTTLDDDQIAEVIQPIVNAERDGYEQYDNDVLLQALKERFPLEYADMYTEFDKLNF
Ga0211729_1065985589F008165GGAGMKDNKYMGAWDLEVNGKYEPREVTIERIYQDTFVGEMGKEDKVFVKLKEFDKPMVCNRSNFKRMETFFGSFDPNDYVGKTIVITTEKVKSPQGLVDALRFSTRPLPKKELPKLTDEQLEKAIDAVKTGRTTIDKIKKQYTITEDQLKMFGND
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