NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10521608

Scaffold Ga0211729_10521608


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10521608 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2034
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006698Metagenome / Metatranscriptome366Y
F031871Metagenome / Metatranscriptome181Y
F043926Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_105216081F031871AGGAGMKVNHTLYIYKADKRCKSGERLLSTTVWQNRDAAEMAREVRELQYQTWPKSQGYRLEFVPTMKTVTNLMSGKEIQIAHDTPRSCDPSSELYWSM
Ga0211729_105216082F043926GGAGMIKWECQMFYKDKLYSGHYWGDELSLARARRKVKELQRMHPPMRFVLTDWQKGSIINLHTNTKELA
Ga0211729_105216086F006698AGGAMQPYYDTIAEFERDGFTIIVDKTYEDIHPSDLFDDSEHDIKQLCEDIECGNLDWFILRVRVLVEGLEIGSSSVGGCLYKDAREVLTDGLAENEIDVALAEAKSQVYRLYKTFQSLSWELDAGHVA
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