NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10341993

Scaffold Ga0211729_10341993


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10341993 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11606
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (61.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F042904Metagenome / Metatranscriptome157Y
F078716Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1034199318F042904N/AMGKEQTVLEAIIEEVATDLYNKWSAALPEEERNDVAFQAMSKNAQETTLFVIQTFMNKFNAAADELKDK
Ga0211729_1034199323F002060N/AMSIDLTAVLLSISAAILSGMGTAIVAGIRENKKERVRQYERKQDMLKLEVKDLKIQMYQLERDLAEWKDKYYNAIQELIEVKSELEETLIKISLIDMEFHEHEQ
Ga0211729_1034199330F003582N/AMNTYVVKIEVEAHIEAFTEDDARDYISEIFGVDDEVKNVKVLNVKEK
Ga0211729_103419938F078716GGAMSDINGTGMENPPNSTPSGAVTSREATRKNPKQGFRSGLKIDTNKHGIRRETSLDPKPPKKYGRKKV
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