NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1019708

Scaffold Ga0206127_1019708


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1019708 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4316
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F033796Metagenome / Metatranscriptome176N
F059965Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_10197082F059965GAGMPLPPSMEMELMELGILKSDTEELESIAEQTGFYAIRAETIAWHNTLIIDGEVMF
Ga0206127_10197084F006939AGAAGGMTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGVEV
Ga0206127_10197085F033796AGGMSSKQDENKTYKVAGVHIGKKGVTVLEGKQRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQAEGSI
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