NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194035_1027330

Scaffold Ga0194035_1027330


Overview

Basic Information
Taxon OID3300020167 Open in IMG/M
Scaffold IDGa0194035_1027330 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2109
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.663Long. (o)-93.723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041089Metagenome160Y
F049449Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0194035_10273301F041089N/AQILFPKKATLEQTGAIIRFCKQMKIGANWLCVDRTGNGAGIHDSLCSLYGQEVLGVNYSWAATETHILGDDSKKANEVYNGVVTELIFGLAKYLEFDFLKIAPSFRNDELTKQCISRRYKQMGQGLVRIESKADYVKRTRQHSPDALDSLSLLVFLMRQRAGSVPTMTDPKPEPFAKRIEGIVDGLEFIDFSE
Ga0194035_10273303F049449AGGAMATTTSKPLPPDITDIYASQAARIRDATDKPKIVGLEISDAGPNSSSDIVNPKNLKVRRVFRDTEQAYSAYRRLKQQNIERNRKNQLIQKKLNNEPPYNQKKLESMGQNWRSNRPTGFLSTMVSRIQPPFRQVIEQGQTLTYTKYPLEGVDSEQKTKIFREEITKCIRSWRGHDDLVAQIVHENTTFGFTAMCWDDLRDWKPEFLRQDYTFFSIETPQEPDAAPIWARKRRYQVAELLPLLEDPELSALAGWHIDNLVEAINNATPVGRSLDAGEDARRYEDWTREG
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