NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1028649

Scaffold Ga0206128_1028649


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1028649 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2997
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F007827Metagenome344Y
F042015Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10286491F001802N/AMQTMKHLKKDYIQLGNLIYRPYKVCDLPQNFGCIEFNEKEGISEWFNYKGYTYIFETIAK
Ga0206128_10286492F007611N/AMKKKWITVLDYETSRVYQYQVTINKHAEEYITFKGHRLSNVEWMEHQFHAVITK
Ga0206128_10286494F007827N/AMKLTNKQKRSVKRQVQIDQGVKTPGTRVFVSKKIYTRKKKHKNERNR
Ga0206128_10286497F000126N/AMNQRDFSITREKGEWYDVRVIDSYGKVYHNYFEKSNEANDWVYYIWEKEEWFNSVNSQELLANAIENCKRLDKNINVREI
Ga0206128_10286499F042015N/AMYKNTDKVRAHREELKRLLFSVPTEGRKVVKTITVTMMTNKHWKGYGNVSIDSDGPNGFTHFGTSQKNPMEYVLNSEEYKSGEYQLIIK
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