NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1025325

Scaffold Ga0206128_1025325


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1025325 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3263
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019811Metagenome / Metatranscriptome227Y
F020519Metagenome / Metatranscriptome223Y
F056427Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10253252F056427AGGMNIAQEYQEEREKIELNRTLDWSTFSKDYIVAGEKLKPMTVQVWFDLLAIKSPLLYSHEPTVEAIVDYIWRNSVRYKASGWFKEWRIFRLYRRVIKSIKNKKEGASLVYVLCEHLKTSLDEFPTDQSTATSKKVNSLPIISGEASMVDELASRYSIHPEEVLAMPLRRAFSLQRTIRMSTIPGYKLLEPDSLRAIKSKYLNSLNNGK
Ga0206128_10253255F020519N/AMPAATDEEVFNFEGNMEQSFYDFLLANGIELATANDPQRLGDDFIGVQFTIEGISEDEHMSEKPDGSVEYDHYNYSVEITVHTDRVENAVPGAAFSRYHRELVAKVRNLLSISRAAQVSSLNDQIDLYWINRLIPSETTYTAYDSSNDETVMTFTGDFSILTTAWPVA
Ga0206128_10253258F019811N/AMGTFDNFIKTAMTNSLGVIGEPASIGGNQFQAAFEESSMDITRHVFGDEDDVSTVATCLKSALTNEPRINETLIRVNQRKTYVITEVQSDVESYAITLRSKDG
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