NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1017572

Scaffold Ga0206128_1017572


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1017572 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4189
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F021302Metagenome / Metatranscriptome219Y
F059342Metagenome / Metatranscriptome134N
F103885Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0206128_101757210F103885N/AMETLLKKIKPKYIKKIKSSDYKYSASRILAKLESSTWYGELTIGEVSEIYDMCGINKCRVSAWDMRFGDNILTEEND
Ga0206128_101757212F059342N/AMSKTKYNGYTNFNTWRVFHDTLSGIDFESKVTADELEEISLGIVLSNFEMERGSHLVEDYARLFIELADFEDIADSINYDIK
Ga0206128_101757214F001217N/AMSATKFNGFEKYFIQTALRSAIEQAELDVLAAESEGKRSIYAPGYFSMVGNEIIHKVNRMTLKKYQD
Ga0206128_10175723F021302N/AMQRLIKKYKHKKRKANHVEFLSSRITSLHNEIVNASLRSEYSYNKNITIISGNIEVKAKLLTKYNRRLKLITF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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