NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1011608

Scaffold Ga0206128_1011608


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1011608 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5584
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F015096Metagenome / Metatranscriptome257Y
F103255Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_101160813F015096GAGVRLCINHKNEDNMNYGTQWLARRKELEDKYVELMLAKYPLLTDVTTDTQHKNGTRMFELNHKKYGLCRFATYKSGMVRKIIRTRFGELSCYQLNPQRTNTRYYVTLSDNSELNVKSYEGKQRVGITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGILYKRM
Ga0206128_101160815F001217N/AMSKTKFNGFEKYFIQTALKHAIEQAEEDVLAAEADGKRSIYAPGYFTMVGNDIIDKVNSMTLKKYQD
Ga0206128_10116088F103255N/AMKSTADLLQELSMYANLNYEEDWYLKDKINELKTRIYEQTNS
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