NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206128_1001998

Scaffold Ga0206128_1001998


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1001998 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19005
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (94.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F004646Metagenome / Metatranscriptome429Y
F016668Metagenome / Metatranscriptome245Y
F038194Metagenome / Metatranscriptome166Y
F067630Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100199812F016668AGGAMIPIGQLRLLLTKAGLEYVITRVEGNVAHVNILVAEQPDVHS
Ga0206128_100199815F000375GGAGGMTKLYDLEQMIMDCWHVCDDLQVVFKQIGDGEREPTQDELMNALLGMQQVYQWKFEQLFNKYEDVLRDRQ
Ga0206128_100199830F004646GGAGGMIYAIADVPHADYDNYDTLNKLFHALSPHGWEHSSWKNDTCPSLLKEERHGNYCQVFVDYVDPAMREDPEWSLLSYNCYDAEGMMTFHEEFDNVDKLIIYLTKKVTS
Ga0206128_100199831F067630GAGGMARLDIDTTTLDVAARALAKFKLDYPDRITIWVEAEEGQLDIKIGSTAKRRNEGGMRHHIYFHKTDGLMEV
Ga0206128_10019984F038194AGGAGVAYEIKPGDVAIVLSPVVEDGEWTGSIKTGMVFGSAGSEDGMRAALDEALTMSAAQQFLELYPDAWEDFADLRQGIIQEMFPDQYAEAEQEQAEATAYEVEDNVVTLTRWSKTQGSA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.