Basic Information | |
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Taxon OID | 3300020166 Open in IMG/M |
Scaffold ID | Ga0206128_1000328 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 56230 |
Total Scaffold Genes | 74 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (72.97%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004144 | Metagenome / Metatranscriptome | 451 | Y |
F009293 | Metagenome / Metatranscriptome | 320 | Y |
F089431 | Metagenome / Metatranscriptome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206128_100032827 | F004144 | GGA | MKWFREARHHLQVETGWGYWYHLWHSIKNSWALIKIALMSLIHGLLPWIWKADAPKGVIKMYHQIMRIKHIKEMDTLRKNPKNERYRDTTTDPTE |
Ga0206128_100032830 | F089431 | N/A | MPYGQPWHYIMKSSNIMKKNKGVNYYSGDKVKDLADAMVEKEVIVGETHIDSNYEDEMYSAEQMERHDKMDNIFKVDNNPSRWDHNKTRSTWHFDPFEDPNEQSFVVPCRFEGDYSEAIAYALKQAKEMTIGNYRSRNDSKQDADLHDGEILDVKRATGKDDLSSMYYDKIARTKFNKETGKKEVIENRIPEYEIFFKIIEELGVDVHQSRLHIQRLGQVTPIHIDQQMRYARPGWQKVWQDAGADKNPLMLRRFLIHLQDWEMGHVWQFGNTYHQGYKAGTVTTYDWCNMPHGTANFGYTPRVTFQITGFVSEKCQWMIDNPDPDRVIKL |
Ga0206128_100032843 | F009293 | GGAG | MTRIAKDTIAGKDFIVNVFDANKDDLDDNEKLYAAFESGWPVVIKNLTIPNLDYEYYDNLPDWTIKDNKWIMPWYNSHIKKRERLRTERGWTGGEIDIFHKKHKQSQAGWNEIFDRLFPRYNTTERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKRPRVLSFGPDLEQMYMQYKDEFNLEELDKNDVHKFITEMRNRCVWNDQKWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADILNNSLQHPELCMVDRIRDL |
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