Scaffold Ga0206125_10085029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206125_10085029

Scaffold Ga0206125_10085029

Overview

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10085029 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1383
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032243	Metagenome	180	Y
F066694	Metagenome	126	Y
F070308	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100850292	F070308	GGAGG	LKVGNLVKRRDPPWGTVDQLGLVIDMETVEQAAYNPKVAKVQWLGGEYPPFMYKPDALIVVSEA
Ga0206125_100850293	F066694	AGG	VKVDLGIRAGDLVRHNSYKGLLGIVVEVNLNYAGTPVAVAWTGRNPYGFGKNSIHHPDRLEVIREGR
Ga0206125_100850295	F032243	GGAGG	MSSNHEMFGAEEDWVQPQVGDLVECRIGYARTSLGVVVEPCDAIKRDDLWCQVALNGGGTKILPKKDVTVIQRGEV

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