NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10068388

Scaffold Ga0206125_10068388


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10068388 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1621
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004488Metagenome / Metatranscriptome436Y
F021539Metagenome / Metatranscriptome218Y
F028002Metagenome / Metatranscriptome193Y
F080233Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100683881F021539N/AMSKKLEWYIIIFLTVILLGLSACSPNPHVDKQPPHETGEEMTDQITKDMEAMDREKEQADNPRATNFEGIAHALACMFAPNECPANKSKEEKKMDR
Ga0206125_100683882F028002AGGAGGMKKVIDEIKKHKKAMIGVAVIVVVFAWILITNEPAPVEAQ
Ga0206125_100683883F004488GGAGGMFARLRGWFETWKKNLFDAYDPPKPTIYKLGQKKFVKVKRIRTGSNSKGPYLK
Ga0206125_100683886F080233N/ANNMFYIWHTLIIATFIAVAYYMGYQHGGKKAKVKETIRKS
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