| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10054782 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1906 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007390 | Metagenome | 352 | Y |
| F032032 | Metagenome | 181 | Y |
| F060907 | Metagenome | 132 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_100547825 | F032032 | GGAG | MKKNVISKKTIKVGNKHYTEEKYHPLFPSDRIITARTRKLTMEDFFNVGEVVLILLAGIFLLKIMFDFGMAMEAWSELDTIMRGY |
| Ga0206125_100547826 | F007390 | GAGG | MKKFLILLFLSVGLSQTTFTDEEIINLENDFIYLENMVDSLAFEDSLKTILVSTLEEELELTNEELKLTNEQLALTEDKVKLVKPSWWENKWLYFGYGSALGVSITLLINQITDAVNIF |
| Ga0206125_100547827 | F060907 | AGGAG | MKKLFLIIGLSLPLLAQQTETDKEITKQEQRENTTGGVVSTLQDWDFRKYEAAHSRAHAKMGEHPQRYKRAQMVREHRTKQWIKNILIGGVAYYVGYKVAQDEMKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |