NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10038160

Scaffold Ga0206125_10038160


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10038160 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2492
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F034541Metagenome / Metatranscriptome174N
F042349Metagenome / Metatranscriptome158N
F057435Metagenome / Metatranscriptome136N
F085576Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100381602F034541GGAMKTVESMTWDELQSALTEYQVNGNGGGMGVRDVQIKHSIEDEVAWRLEKGYTDLSPREIEIELLEQGKIERRYL
Ga0206125_100381603F042349AGGAGGMIEFEIGDKVKVIGHSTVGEVIDIDYGENLVTISDSYAETNNSELQYKADELQLLTMDHDEDMDSLDEMRDMEMRDNGYKWEDWN
Ga0206125_100381605F057435GGAGGMLKNIERQIMLFTEATGVTERAEVIHGTLFVKFHNPEDKEWFRISLKNFCKIFINNDTGVNANEVGDEVAYDIVPAKDETTWNTTETQESKISTHIDLQEGK
Ga0206125_100381606F085576N/AMKQWYIKLKAGNFENGYYEVGHNFDLVLELVKSEFNKDCIALGFTPVTSEIVYMEQNEI
Ga0206125_100381607F004368GGAGGMGTRLADIVFDRHEDFLYEDDRAMKLTSYVMAERCIQVEVAKIYNDKEEGDYSSLTYIIEGGFKGFHNMEPSELIEEYKQIEEQWYELESCDGLYWDAYEEDPIHTLNDEVVAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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