NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10024113

Scaffold Ga0206125_10024113


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10024113 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3521
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F014160Metagenome / Metatranscriptome265N
F025069Metagenome / Metatranscriptome203N
F025529Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100241132F014160N/AMKTIKDFIQDFDAPFIDWESDHDSEVLKQDFVEAQLGEYGIEFSIYASRDVSLSHGTYFETEEVTLGDPHFEIEIFAVFDKDFDDIDITDKEHELLIQTISDFYE
Ga0206125_100241135F025529N/AMQGSKEYFLRVKEEEYFDLPQALRERSIVYYNDYELYKDNPSFKALNKAYRDAKKALENWKFDQRHN
Ga0206125_100241138F025069GGAMALGLWGMSMANTITSFDIASASSVAQLVLSILGIVYLGVKIVNETLNGRVEREGKRIANEINNRELDEEL
Ga0206125_100241139F000751N/AMKIYKAVFDTKEQGTEYLLNIGVLVEQEGENVFAPTTAAVVYIGKVVEIPATYDADGNIITPAVYYPGFAIDVMSSETLDFGSYAVYPADKSAHSFYGYPKDAEVKPTN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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