| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10008187 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7952 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F000896 | Metagenome / Metatranscriptome | 845 | Y |
| F003357 | Metagenome / Metatranscriptome | 492 | N |
| F016276 | Metagenome / Metatranscriptome | 248 | Y |
| F029115 | Metagenome / Metatranscriptome | 189 | N |
| F071648 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1000818711 | F071648 | GGAGG | MKRTFACTVCGTKFVHKKPETLVGKLGIIPVNLCKKHFKAVMKHDELLLNDHRKVA |
| Ga0206125_1000818717 | F016276 | N/A | MIIRGHSGQDIRRMIWRRKFKLLTVAVLIFIAVALIGCTKPKPTLNALDKFWDTLGGKTTDLVEETK |
| Ga0206125_100081872 | F000896 | AGGAG | MTNKINLVINLSILALLIYLAVSVKTLQDKVFPDPNIMKPLMGYDDSKQELEYNIREFLNNALEKAIDEQEK |
| Ga0206125_100081875 | F000302 | AGGA | MIGIMTQNTKDRIADLERQKIDLENQLETLGYANNLVRMHQIEEEIYEIEDTIRKLLP |
| Ga0206125_100081876 | F029115 | AGGAG | MDTQIEKKIIDFTRLTGLAERITMSHGTLYVTLNQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDEKYSGKEIMDNTEMGIWSEFAEDELMNNIPQDVDTMLDLENDAKEGR |
| Ga0206125_100081877 | F003357 | AGGAGG | MTRNSWILKQIYTDAKNNLGWLFKVVLLAGGFIAGIKLLMFFSVPKEIVFPVLWTAFILVATYHWYSMKYDWKKDDKAYDRASKRYMKKLKGGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |