NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10007257

Scaffold Ga0206125_10007257


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10007257 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8689
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y
F040113Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000725712F040113N/AMRLGYKKFKEIKKWYGSSDFEIGYDSYFTQGKGITLRFGYWQKVDFEGLKELLPQYCNITENIVDEDDDCGTLYNYNITDGRIY
Ga0206125_1000725713F022080N/AMIKEMNLGLVKMNESKTELYGVQYYKSKWERNLGDTLTIDGEKWLVGIIGDTRNDVISALNDIVKKQNSIINKKKYQQRKEEKFIMNNILNNVMKDLNL
Ga0206125_1000725714F031507N/AMLKVNDKIKFENKYGQIQEGIVTDNNYQCDFDADLNGCVRVSVDYGSSIIGTVNTLIDKSQILKNVKL
Ga0206125_1000725716F007723N/AMIKAIKSKLLTYLFKDWVMNETDLETLQVSKQFISKREQAITGHVPILGFRSHSTDKIQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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