NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10004845

Scaffold Ga0206125_10004845


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10004845 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11669
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006243Metagenome378Y
F007610Metagenome348Y
F064879Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000484516F064879AGGMKLKEYISWTNSIDEYKDSASLAKLDTWGYEVLPGSVRLPKLNLENAVKGDEGYDSVRNDLITNWAKVTWPFLTCIDAKIQIQRPGEECKPHLDFLGYYLENVCQTLPGLLNVEHTLEKPAIDIWRVFVATEDHVPGQVFSVNNKEWTWKAGDCMRLNNWQALHWTKNTSQVDRAIIKITGIKS
Ga0206125_100048453F007610AGGTGGMSGRKTIKIDAPIMMTNDKIAVWMDQGEWAMDFFDWLTKAKLNHKLSGLQHMNSKIKLTFVTAKDCTMFGLKYAARKK
Ga0206125_100048456F006243AGGAGGLSKIDVDNSDELDFVDGDSCVIISKSGDIRKILVPKMDTAMINSAGYRALLDVIDLLQPGSKEEFIKHNEKDRGSIH
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