Basic Information | |
---|---|
Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10004343 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 12670 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (26.32%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001728 | Metagenome / Metatranscriptome | 645 | Y |
F010473 | Metagenome / Metatranscriptome | 303 | Y |
F018905 | Metagenome / Metatranscriptome | 232 | Y |
F032988 | Metagenome / Metatranscriptome | 178 | N |
F068718 | Metagenome / Metatranscriptome | 124 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206125_1000434312 | F001728 | N/A | MNKFELKPTDKKDHYRFFINGVDVTGEQERSTFRHIIQVMGNGITTGL |
Ga0206125_1000434317 | F018905 | N/A | MKNTYKISLTLLLKLSKTKKIFILFNVENNKIKDYIFTNDLTRYRLKYQTFKLVEIIKPNLKNLTIQL |
Ga0206125_100043432 | F068718 | N/A | MLKDIIDLLNEDDWLISDEDILIAKGKYQSITNWKEFKYNIKQRRL |
Ga0206125_100043435 | F032988 | GAG | MEKKNLAAELNKIAEEFKVRLQRGARLDKTVATGKFANSFNVKVKDDSIEITSDASYAGAVIEGASPARSTQGWESKKRSIESWIKAKGIRPYRKLKSGYKFAKTSTLKNSAYKSAVFAIMQSTSQRGTIKRFGYKGSNLFERVYKEIEGKIGADITEAYSEDLRIELRKVINISNE |
Ga0206125_100043438 | F010473 | N/A | MDLVRYEVRIGFFKGLLLGLRHYPFESEEVYEEDIVLYFGIIQLVITRIYQKN |
⦗Top⦘ |