NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10004343

Scaffold Ga0206125_10004343


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10004343 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12670
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F010473Metagenome / Metatranscriptome303Y
F018905Metagenome / Metatranscriptome232Y
F032988Metagenome / Metatranscriptome178N
F068718Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000434312F001728N/AMNKFELKPTDKKDHYRFFINGVDVTGEQERSTFRHIIQVMGNGITTGL
Ga0206125_1000434317F018905N/AMKNTYKISLTLLLKLSKTKKIFILFNVENNKIKDYIFTNDLTRYRLKYQTFKLVEIIKPNLKNLTIQL
Ga0206125_100043432F068718N/AMLKDIIDLLNEDDWLISDEDILIAKGKYQSITNWKEFKYNIKQRRL
Ga0206125_100043435F032988GAGMEKKNLAAELNKIAEEFKVRLQRGARLDKTVATGKFANSFNVKVKDDSIEITSDASYAGAVIEGASPARSTQGWESKKRSIESWIKAKGIRPYRKLKSGYKFAKTSTLKNSAYKSAVFAIMQSTSQRGTIKRFGYKGSNLFERVYKEIEGKIGADITEAYSEDLRIELRKVINISNE
Ga0206125_100043438F010473N/AMDLVRYEVRIGFFKGLLLGLRHYPFESEEVYEEDIVLYFGIIQLVITRIYQKN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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