NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10001219

Scaffold Ga0206125_10001219


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10001219 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30604
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.28%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026881Metagenome / Metatranscriptome196Y
F046384Metagenome151Y
F055737Metagenome138Y
F056147Metagenome138N
F088901Metagenome109N
F101156Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000121914F026881GGAMKNKKYTTKERFKILEATVATLYVAIEKHSKKIDVIDKFLTKATKDYKEK
Ga0206125_1000121915F101156N/AMKKEVTIEYDNIALVVVGEYEKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELETQAIEIIEEQW
Ga0206125_1000121929F088901N/AMVEVKQDEVIVTKNNTTKIYTLKEYTDNIYYRKLYTRIYQIICILATMFIPAIMINLFK
Ga0206125_100012193F056147N/AMNIGVKIRRHENQSEYYDLKLSTYKETIEGKFSKEDLRYLIQQIDNEII
Ga0206125_1000121930F055737N/AMTRNVREAMSWCFKNEIKIIIKPLSKTGKPDALIEIHREGRIQKGKETYRQDKKLHKKIEELYLHLHKTLR
Ga0206125_100012196F046384N/AMKNEPIHETVRDLYTFKNMQIDALQKELCKANTRITNLETFIFELCDDGCPESYKNIVKKEVLNDFTRD
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