NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10000052

Scaffold Ga0206125_10000052


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10000052 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147105
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)146 (86.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F020697Metagenome / Metatranscriptome222N
F077277Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_10000052123F020697GGAMHLNKVLVLGCSRSGTTEFCKTLQEVSSKKFVWEFGFDDNLNRLVSSLGITEFLDRIYKDKNTLGIKYGVYPQKKIHLDLIDSHDIVFFLSRRNVFEQAISLNLAKRTDKWRPIDFGVETFSQKEKDEYNKLKIEKIEVEDIKKDIQGIKEASIKVIDYLKTHKSSRVLFYEDLFGFFSGVKLNTQKNYKNIENWQELKTFYEQNKDFCHFHL
Ga0206125_10000052162F002747GGAMAKDATRFFVNVSLEIYVPDQGFGEKANTNEWKDAEWFANEICSQIPKAINKNFEYSERPYSVNWAHKGKVERG
Ga0206125_10000052166F077277AGGAMSYVDYPEKLNKVKRQLNHILNDHRYYQPDNSREFTISMYNAFGKRKITAKMQISMDKIVAQYVKWQESENKLDKYEKLERIEDGTYKINLIRTLLSGCDYQPGYVVRSNEFLGSVEKQLRFNGTLSVKQRKAMNQMYKRFKARCESRGIHNVRIEMKDEKKVRSSK
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Biomedical Sciences Research Center "Alexander Fleming"
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