NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10698870

Scaffold Ga0211726_10698870


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10698870 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4052
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F002935Metagenome519Y
F040623Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1069887012F001507AGGAGMTTTHKPYTISELIEAIYEDHYSHFDFMDNMNGGECYCQIHTTMNTIVKYWEN
Ga0211726_1069887014F002935AGGAMRERSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECKVDNLLFITLEEKNVYGDNKYALVCSEGVGWEQDTFGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVAEDTIKV
Ga0211726_106988708F040623GGAGMKVRISIEQTIDTDDYGFYDEMSDEDRVVYLIERFAEDIDTLVKNDEVMDNISVEYLED
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