NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10604805

Scaffold Ga0211726_10604805


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10604805 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F007310Metagenome353Y
F013084Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_106048052F013084N/AMGIMNALELMAEAKETAIYRGHNVKYWNVLGGDCYSLECKDCKMSVMVKENPLPNEINVGGEAVALNCVKPVKEKKLKKK
Ga0211726_106048053F007310N/AMRTVLWNNSERWFNHHHYECLIEDITGFDLQKDLCAESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKTLVEKFNSQADNNGRIVVE
Ga0211726_106048054F006220AGTAGMKKFKKFIEELAIATGTEMMRASQMRPTSFKDKSKYSRKQKHKNRQDKNSDDSFFA
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