NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10003682

Scaffold Ga0211726_10003682


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10003682 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2689
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F002935Metagenome519Y
F034472Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_100036822F002935GAGGMSERTKGYVGQIVDGKKLATIANDIYKAQYNEFSMCTVDDLLFITLEETNAFGDHKYALVCSEGVGWEQDTFGCLEVPTNIGSMGLWNGRVFISVEKVKECLTDETEDISDYIRVFGSRLDSNCSLWQSKMSVGAGTIAL
Ga0211726_100036824F000311AGAAGGMYFELTAPSQLALNGALWEAETIGLDPNVIGPLTFNIGTGSIEKVSRIRDKYNLKETYVSEYEKTGY
Ga0211726_100036828F034472AGGAMPNWVYNTLTIQGPKSEVDYIKDRLNAPFTLAQETHGMGD
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