NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10372490

Scaffold Ga0211733_10372490


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10372490 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1927
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F013517Metagenome / Metatranscriptome270Y
F017987Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_103724901F017987N/APQDHISEGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQRHAWDLFFSMMEAGYVPFPGTALPQLQSAIKKK
Ga0211733_103724905F013517N/AMLESLLSAVLPVLKDILWAAAGMLLSYALNKLQSKFQTI
Ga0211733_103724906F001018N/AMTQITQVKLKDLNILKLYEHYGALERSIPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSWLRRSLPLDSNKISGRNYQFTLTRKKDLTVEITSDPEFWHTEERADYCIEEEVTTTKRVVLRSMSGEVLDERTEPKTTTKIVPNLDAIRTAHQTGRQLPTGVKVIQEYSVRSKRIYAEPRVELEASEYPGHLLPED
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