NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10209536

Scaffold Ga0211733_10209536


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10209536 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5324
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032141Metagenome180Y
F041596Metagenome / Metatranscriptome159Y
F091245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_102095364F041596AGGAMNKTTPTPADNIWADAPAAAVPAKPRTPKAERDIKDIRESLDPFQASADFDIDGLMTDFPTATELERFVFDQTGAVLNLKGRANKLKYQVAMDVLNGQPVDPKFIGSGNPYLDKMDMVPEEPMKDLPPRDPAIPHRDLLQNEFFTAFVPHSDPEYHAKGVKMHCTFRKYKNGCITYEVLGPIEPRPHGEKMDKFGRIRPEIIKWVDPRTGEQIVQREDGSLTTVGRRLKAMMQTMKYNNTSQWVKYIDRDFLSLDRKAAQNPWDLEA
Ga0211733_102095365F032141AGGAMISTKNMQSRAINQARGPQTGNAGTPSKRSDFMTAKAKSGSEKAELATMITDAVAARGRGMKGFRDAAVEGLHANTNVGRGPTKGNAGRPQKSGAARRGASGATSGY
Ga0211733_102095369F091245N/AMTDKKTDQPKKRVYTKKAPTRGGYRPGGGRPKGSTTKIKIEDLMAQIELQSGETYDQLLAKNYVSAIQRSDWGGVRDYDKAFMNKMIADKQELTTVESTEVIEQKQAAFAEAIRQITGIVPAN
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