NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10069084

Scaffold Ga0211734_10069084


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10069084 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18888
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065717Metagenome / Metatranscriptome127N
F078642Metagenome / Metatranscriptome116Y
F104702Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1006908413F078642AGGAMKSFNGGKKPANQGSAGKAYEQPIKKSGVPNIAKPGMSKIMFSAQPSGTKGGKPPKHAGK
Ga0211734_100690842F065717GGAGGMSLHRQRTHPEFVEGCFGCKAATLELHPGDAAHMREVPKRKWDAELNAYADARRQGIQPAGTSMKAIKDAHKASENLGKPYNGEKMAPAHRLANKKIANAISKLGI
Ga0211734_100690846F104702AGGAGMAYYFTPPTVGEGPLGLGALFYRYKITKANSILQRTDGSYYSIRTPSVDETQSAAYYYPGGHKNLISESERTSLIAAGYGPYITEE
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