NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_11026284

Scaffold Ga0211736_11026284


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_11026284 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2995
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008689Metagenome329Y
F028165Metagenome / Metatranscriptome192N
F030092Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_110262841F028165N/ARIEIRNVSNEEHLMALAFSLEEKKERIRQAMEIFSATGSWSNADTIVRRQSVEKWIRNPELQAYATSLGYQQLCTDPIATFAPETKHPQCRMSFSGAMVHLKEGRYLCRDGARLHYTISHGALVMYKLDGAGNRHFAGPAYFRGADILAADWVIVK
Ga0211736_110262843F008689GGAGMRFAEVIQALMAGGGNAVEREDWGGFQFVRYSEIWDAFEIHFAGITETERLEELSLSPGDLFADDWVIVKLDPRTGEVAK
Ga0211736_110262844F030092GGAGGMILFALGVLLGAGCLAIGSELYTRWLYADVKKRAKAQGMSKDKLRAAMLWATSAEIRKNLDE
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