NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10842649

Scaffold Ga0211736_10842649


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10842649 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116130
Total Scaffold Genes141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (54.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034149Metagenome / Metatranscriptome175Y
F089902Metagenome / Metatranscriptome108Y
F101034Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_108426495F089902N/AMTERAQKLMKEIWEERNSWADTEEKLVAAVIRKTMDHCKTFVAQKMNNMSVVDKTDLIALSKELENLP
Ga0211736_1084264966F101034GGAMKLKFPTLDNIVPVMVAFVATAIVGMTFTNYVICNFKVMTSLHYLYLVKAFDKSGAKPPSKCDDNTSESIQTLMSLLATIIALKADLKNKKENE
Ga0211736_1084264977F034149AGGMEENEEAGFEIIHLSFRKRESSHLYGGPVNYYVGNIVFRLTDPDAKRRMDYYLEENEDIRVAPDLELMEKYYEDLHFVFGESEELDEEYDGEKYTPLDIRNKNGIKDEDVFIRAHRRNMAPLHGFVEYNEKFNCYRMHEYFQDTPVVRGIIQYLHDMKDGKPNPSRTVYHEQFINTLENLCWWWD
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