NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10794382

Scaffold Ga0211736_10794382


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10794382 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F050990Metagenome / Metatranscriptome144Y
F068809Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_107943823F001968GAGMFDELWSEIADSQGEIFDLDIPELKDEKFDVNEYLNANYDY
Ga0211736_107943824F050990N/AMNPDTLNFTGDAVTFLGLIGVISTAIIVVTVFRSYFNSPLRK
Ga0211736_107943825F068809N/AMNFLTPDDLNNLIRLVEDNNQYNDDEDVEFWNDILSRLQQQYHHALYTS

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