Scaffold Ga0211736_10590987

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211736_10590987

Scaffold Ga0211736_10590987

Overview

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10590987 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2648
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	4 to 10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078718	Metagenome	116	Y
F092057	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_105909876	F092057	AGGA	MPLTYDISKIEMYKDNFDIAYQEYQQFGEKYTDVKPRLKGLIFSGGMVALGSITYKNVSEWYARLKLCEEIYSAYLTSEYVEETDNYESKPLEAKELIKYIGLITNHSSITRSQWIKNVKRNMTIDLTASQMEYRLKKLEEEFQREVFK
Ga0211736_105909877	F078718	GAGG	MSIKPNQAQMYPKVSEWYETNVVEYRENTPFDKWYIEVVYFEADAEYSYGIDKKQKQIMSGAYQRVEITDKLNGNFWENAFLGETAHQDIERWANDIVTKIKYGKVKS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.