NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10547070

Scaffold Ga0211736_10547070


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10547070 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3056
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F026561Metagenome / Metatranscriptome197Y
F073565Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_105470701F073565AGGAGMTNGNDLTGFNEVKAPTTTAWNGEQYAEAPAAAFPSTDKSSQDGSGLGNGGK
Ga0211736_105470702F001280GGCGGMCVECGCESLGSETGIASVNITDVSRDGESGLTLGMTSTPEQTRQFINE
Ga0211736_105470703F026561N/AMSENGTGMATPPNNEPSGAVTSREATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0211736_105470706F006846AGGCGGMLIDLVERYLMRPKRLREAIQAVVHENDELLRMLKEHEENDTPTNLTWSEGDTWYGWTYNKSKNRYYFDDIGNTSLMGLWEDQWAREAEAEAGRL
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