NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10524330

Scaffold Ga0211736_10524330


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10524330 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4970
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082697Metagenome / Metatranscriptome113N
F088907Metagenome109N
F093860Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_105243304F093860N/AMSKHVVFQPVDLGDDEVKDTVLWSATFHIHPEIEPTLPEEMLALVKNKNSINYPLAYWQKEFTNLGFVLDMDFPYCKEYAWDYIMPDAIRITIQAKDLNTTFNQIIIPKSIARDILSEMKLPMFGKMHPEKFHNKLVQYIDLSQDDTALVENIFEALTELEDLCTECISYESFIEWKVS
Ga0211736_105243305F088907GGAGGMSHFYRQRSYSFNETDEMLTEIKKEMSNFLTKEEAELILNRRNAMIDPAPYRMNEEIGTLHREIDGLKREIYLLRTYINQHMKKSEIEEPTL
Ga0211736_105243308F082697N/AMNYEDLDEEQQLELQKQFEENRKIILAMDPETFLERLVKMHDSTDVILEGYDLVTNINEGHGIAVAGLIRLRNALMDSIEWITTNLIAGDEEEEL
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