NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10431249

Scaffold Ga0211736_10431249


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10431249 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2464
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F005389Metagenome / Metatranscriptome402Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_104312493F005389GAGGMANKSKKAAKRGNIYETVSNNIQKITRPSGTTSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG
Ga0211736_104312496F001754N/AMNTVYNNFAASKMSNNPRFEVVVSFRDFMGKEHNIVCKTRKKLVEANQFLKMFKTESVAINKILSEYPVVMGNFPKKYHSEIKRELASAGFSTVSNFLIK
Ga0211736_104312497F003291N/AMNTNEMNEKLVSIFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAEVIDTKPNSNAPMGSAAYKAYEAMYESDVRAHS
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