NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10372057

Scaffold Ga0211736_10372057


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10372057 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12627
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.51%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F004314Metagenome / Metatranscriptome444Y
F005629Metagenome / Metatranscriptome394Y
F005727Metagenome / Metatranscriptome392Y
F015704Metagenome / Metatranscriptome252Y
F027748Metagenome / Metatranscriptome193Y
F037598Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1037205712F005629N/AMTTTTDFYIKRTFADFFGKVDHVDFIGPYMESQQFAVKMQEGADRRRMKPAKVQITRWEWVQGKDA
Ga0211736_1037205715F015704N/AMTFPQILWNATNPENGTIRWSTACQAAKDHSCWDDFRTDYGTVPFRVDTGEFLVWLGY
Ga0211736_1037205716F037598N/AMTVRTNVLPLDLCTVTLTEAQWSTIRTAVLCLAVDCRTAGKGTDADYYLNAYNTLKQAMGMEG
Ga0211736_1037205725F005727N/AMIRTLTRSRSPEFHRATMLRLTIAALLLWGFWGPLYPVRSVTADLLSTSADFLRR
Ga0211736_1037205727F027748N/AMSTATRLTANQAKSAIYDLADDFSWETVAKEMVARMSGDEARDFLEDFQRLYAD
Ga0211736_1037205736F001968GAGMFDELWQEIQDMPGEIFDMDIPELREDNKFDVNEYLNANYDY
Ga0211736_1037205739F004314N/AMYDDYDFDYSYTGNDYADLDEHYTLDVRDLDEDYARDGQDYQDLAYRHYA
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