NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10271723

Scaffold Ga0211736_10271723


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10271723 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23475
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023065Metagenome / Metatranscriptome211Y
F036563Metagenome / Metatranscriptome169Y
F085388Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1027172310F036563N/AMNVQLNLEALKAKDCSYLSILDTSVYPLAPDTAEISISVPGYDNPFTFNYTIGEVNIFNSYNFGFTTSSTSGFTALPDGVYTLTITTCPDTGINTRYHLRTCKIDCRLGVQWAKYVDCCDDEKTLIYLDKIEFLLKGAEAHADLCNPAKATELYRKADDLLRRLESDC
Ga0211736_102717236F023065N/AMYTNSDLIARVRSANKFISDDDMISDRYIYGLLKTKASTLLRREINLRRLLTSDNVYQAYECLHLIEAPGSECDLNCPIRRSKNKLPKIDEGLYSYFIQGVFNTSNSQELFPTTIRDFINHTSLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDLDGSQCMSMYDKQFKFPGYLLDTLIEMCNQSLINYHKLPYETEDNNRDEPN
Ga0211736_102717238F085388N/AMTNCCPNNNCVEIVPSGCVKYTGTPTQGGLIDSFNSCDPYLNDLLKLLDDKVVNLDTRLGLDKTTFDAANNACGTSPVISMTGVTVQDDKYYSAQVVIKLVGVICELRSRLNYLSAKDINVNSGNIHWLDLPLDSSFKVWLADQCLGDNPCSGDEIQNLRGLLQAIIVKLCTCCA
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