NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10263141

Scaffold Ga0211736_10263141


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10263141 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5996
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F002515Metagenome / Metatranscriptome552Y
F011487Metagenome / Metatranscriptome290Y
F039631Metagenome / Metatranscriptome163Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1026314115F039631AGGTGGMTTLDKNFIKSSEYGHLTLNQRIALGAHKVANGETLNFRGASVTTYAKVMRLANRIKQEREFPQCPCGYCD
Ga0211736_1026314119F048982AGGAMISIELQDVLATTRKIRNNDRDSGTHYLLGYLWANTPDKEKERIAKLFAKDLEMENNK
Ga0211736_102631412F011487AGGAGMGNIADEFYDEYYATTCPECRENAVDEYEEKCTHCLLEELSSNYNEDIALEMSLGLDY
Ga0211736_102631413F002515N/AMKKNAEELRRLMELRRSNAASAVPNKKKYNRKKCQSELIQLKYQQKGE
Ga0211736_102631417F000808AGGAGMEYNYSLTVSYDGELVSTLRSADMIEVVDAWHKCVDFGDAKEYATYNITDPWGKMVTKTFYRDGRVTGK
Ga0211736_102631418F000447GAGMGYIEIFRLDETGAGWVNLDNATPDELFNLEVGLLNEGALFTTKEND
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