NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10257749

Scaffold Ga0211736_10257749


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10257749 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2159
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F003542Metagenome / Metatranscriptome480Y
F007113Metagenome / Metatranscriptome357Y
F024306Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_102577492F003542N/AMSKVNFDYDLFSEKIGYDSVNKQYLIRVYEYLVDSIENYDKPTWSGTMRRMLGSNPKGVNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSAEDWSWFIMRTGSCEYSTIIK
Ga0211736_102577494F007113N/AMKIKLNLTPEELKTVEIALCELFNSDTWTSGRNEADIDKIADRAQYLLHVIESYNKNNKK
Ga0211736_102577495F003291N/AMSTNEMNEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAEEIDVKPNSNAPMGSAAYKAYEAMYDSDVRAHS
Ga0211736_102577496F024306N/AEYPVVMGEYPKKYHSEIKRELAAAGFSTVSNFLIK
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