NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10181151

Scaffold Ga0211736_10181151


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10181151 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2004
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005530Metagenome / Metatranscriptome397Y
F013525Metagenome / Metatranscriptome270Y
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_101811511F013525AGGMHDLSLKNPDDIKAELDLCSEELANSLYEFRRCEMFLKITFSQIALTYKMEKNCSVAEADKLAYADSKYAIIVEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLSR
Ga0211736_101811513F032656GGAMFYLVTYAINFVKVNDENIKEDVAHVRFLDTANFANANSFLASLKQVKKLRITSVEWDLEECNWYDYYEDISNTIH
Ga0211736_101811515F005530GGAMAISQSATTIDSDFAPETHTVGSSSVQSGVITTGSGLIRISTTTHCHIAFGANPTATEESLLVPPDHVEFFTFVSGQKVAFIAHGGGAGEINICAVD
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