NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10070449

Scaffold Ga0211736_10070449


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10070449 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4110
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057119Metagenome / Metatranscriptome136Y
F085647Metagenome / Metatranscriptome111Y
F090331Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1007044913F085647N/AMLWQDRNGNWFSTVSPIDIKIERAMIEANANKVWEEGERSGEWLFAEMFGGD
Ga0211736_100704492F090331N/AMSIGLGVAIYATLVAFVSSIMVYYFKVIYPTEEAQLKEKSK
Ga0211736_100704494F057119GGAGMTFLLGMALGSLLTIGATFIFAADRNILDDGDQNNYN

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