NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196977_1000223

Scaffold Ga0196977_1000223


Overview

Basic Information
Taxon OID3300020146 Open in IMG/M
Scaffold IDGa0196977_1000223 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34224
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004903Metagenome / Metatranscriptome419Y
F006090Metagenome382Y
F026702Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0196977_100022315F006090AGGAMLVGPDPALAKVKGVMFGGRKQFLMDTIGEEGFNALLEKLTPRTRGYVKTPLASSWCEFESLIELDRAIHNELKGKYPNVLALIGAASAELGIGRIYRSLDSESLVQFLENNAMFHDQYQKFGAVRFEKTANGARMIYSNYPCYSPLYCASAFGYFLESILRHGGSDPNVTESKCQCLGDKTCTFEMTWR
Ga0196977_100022317F004903AGGAGMSRYLQKISLRPYSDAEIWTGWELENRSGEIEGLILADQLSDEELLAQYGVQEFQKIPGEYLEAGEFRPKP
Ga0196977_100022329F026702GAGGMNFDRATISYPDGRIAHVTPAQFYEIPLGERIQLLTGGRLKFERANQPVSPLEALKKK
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Institute for Fundamental Biomedical Research
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