NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196977_1000038

Scaffold Ga0196977_1000038


Overview

Basic Information
Taxon OID3300020146 Open in IMG/M
Scaffold IDGa0196977_1000038 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95501
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (51.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081525Metagenome114Y
F084700Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0196977_100003848F081525N/AMRTLIVSALTSFLVANAASAACVNRFVVRTERPLQVVTLLTGKLTFQEAQSLAAAISKKQAPPLEWVNEDGKIVAKQYGELKVVRPMPVGCDGKTSGVVMVVSFGSSLPPSKKMHVKIDGDTTVAFDQQDN
Ga0196977_10000387F084700N/AMTAVHLPMSERVLDKLADILFATDEILDMIRIGERPPDATTVVVESSVQRVYDQVNELMKKLAD

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