NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1567859

Scaffold Ga0211732_1567859


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1567859 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18827
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (64.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009530Metagenome / Metatranscriptome316Y
F009885Metagenome / Metatranscriptome311Y
F029107Metagenome / Metatranscriptome189Y
F081245Metagenome / Metatranscriptome114Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_156785922F009885N/AMTTTDWAQFILTLLSIGAIVVGSIRWYIQAQIKPIHEAVCDIRSETKTNGGTSMRDEIKAIKSEQEEAKQLRKATSDKLDHMYDVLLEYVSRAK
Ga0211732_156785924F029107N/AMAQHSLITLSSSSATRLTPNGLHSGMDITIQNTHASAYVYLGAIGVTSSNYGYRLAPGSAWSIELPSQDSIYAITDTNGSKVATLQTGLES
Ga0211732_156785929F009530AGGAGMTITYAIWQGSRLLSIDNIATDIKEIDTLINTLNDSDLGKKIKFCANVMEIKVTK
Ga0211732_156785933F081245AGGAMINFVKELEVNNYLADEQVDPLAKMLDELIMKGEYK
Ga0211732_156785935F087194N/AMTLDEYKQLVEAQRLTSLAIALDALRKSSAMQKEMEK
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Institute for Fundamental Biomedical Research
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