NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1504311

Scaffold Ga0211732_1504311


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1504311 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1690
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036677Metagenome169N
F048160Metagenome / Metatranscriptome148Y
F082379Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_15043112F036677AGGMPAAIVVEGQFDRNYDQLRLGFLKGSNPSAFKRLASFATLNAARTLQKPMRDKAPKGQTGKLRKKVIARKARFNNPAAVVGIKGGRNGVFYGWLVVGGVGQRRTTPNGTFAVKGVQKRPFVDEVVKQRSNIDRAVESYSKTVAAFFNDQPFRNTILKFKRGNQR
Ga0211732_15043113F048160AGGMAIGQSIAPPPEIIFHILGEKFGMWPDEVASLPLDQVLLAWMIHAEMQPKGK
Ga0211732_15043114F082379AGGAGGMDTVKIALEGEFAGWTAELRKQVTARILLDLESGDSSRSLNAFSKLVVTHNFKGLDGKPVDDVLDAPVDALTQTLEAWGKANQPDPK
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