NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1441442

Scaffold Ga0211732_1441442


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1441442 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F040623Metagenome / Metatranscriptome161Y
F070104Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_14414421F009531N/AMTQQVAIYEMNYSCSPGGVDCWEATINGYGTSTTGSDFKTAGDALNWVLDRYPDEMLELTVVSHPAYEKEFV
Ga0211732_14414422F007691AGGAMNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAEIEVGE
Ga0211732_14414423F040623GAGGMKVRISLEQTIDIDDAMSNDIGFEMYGPPDMSTEDKVDYLIARFAEDIDTMVKYDEVLGNISVEYIED
Ga0211732_14414424F070104GAGMLGYTETDIAVMTDAMEDAIKSGRLSDEITDGLEKAMSFLDGLWSEGYFD
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